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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20828726_20829095_F

Intron Information:

Intron Rank:
80316
Intron Class:
major
Intron Phase:
Intron Coordinates:
20828726 - 20829095
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTATATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGACAT
U12 Branch Point Sequence:
TCCTCCTATATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
55.3
0.13
1.3
64.4
41.8
Major PPT
75.8
0.58
0.9
73.5
35
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
52.5
0.16
2
71.23
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011859
20815562 - 20850787
35226