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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20830173_20830573_F

Intron Information:

Intron Rank:
80319
Intron Class:
major
Intron Phase:
Intron Coordinates:
20830173 - 20830573
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATACC
5'SS Class:
major
3'SS Sequence:
CTTCTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TGAGCTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
72.3
37.4
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
88.7
0.87
0.6
84.3
23.6
Minor 5ss
35.3
-1.7
3
46.6
41.7
Minor BPS
56.1
0.05
1.6
58.21
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011859
20815562 - 20850787
35226