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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20835475_20835872_F

Intron Information:

Intron Rank:
80324
Intron Class:
major
Intron Phase:
Intron Coordinates:
20835475 - 20835872
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTTGTGTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.5
0.66
0.7
71.9
32.6
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
46.6
-0.3
2.4
57.98
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011859
20815562 - 20850787
35226