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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20836674_20836783_F

Intron Information:

Intron Rank:
80326
Intron Class:
major
Intron Phase:
Intron Coordinates:
20836674 - 20836783
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TGTCACACACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
82.8
0.74
0.7
77.1
24.9
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
42.4
-0.5
2.1
65.18
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011859
20815562 - 20850787
35226