Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20838954_20839199_F

Intron Information:

Intron Rank:

80330

Intron Class:

major

Intron Phase:

Intron Coordinates:

20838954 - 20839199

Intron Length:

246

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGCAA

5'SS Class:

major

3'SS Sequence:

CTCTTTCCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATACAT

U12 Branch Point Sequence:

TGTGGCTTGATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

68.2

38.4

Major BPS

57.2

0.18

1.2

39.8

Major PPT

84.7

0.78

0.7

31.8

Minor 5ss

29.4

-2.4

3.3

37.9

46.9

Minor BPS

53.6

0.1

1.9

66.58

40.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011279

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011859

20815562 - 20850787

35226