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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20846209_20846538_F

Intron Information:

Intron Rank:
80338
Intron Class:
major
Intron Phase:
Intron Coordinates:
20846209 - 20846538
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
ATCCCCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
71.2
0.53
1
61
37.5
Major PPT
81
0.7
0.8
72.9
37.4
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
62.5
0.39
1.8
71.2
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011859
20815562 - 20850787
35226