About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20848114_20850643_F

Intron Information:

Intron Rank:
80344
Intron Class:
major
Intron Phase:
Intron Coordinates:
20848114 - 20850643
Intron Length:
2530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TATCCCCTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
78.5
35.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
75.8
0.58
0.9
73
31.9
Minor 5ss
36.6
-1.5
3
52
44.2
Minor BPS
62.5
0.37
1.7
73.75
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011859
20815562 - 20850787
35226