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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20853479_20853556_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20853479 - 20853556
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACCGCCG
5'SS Class:
weak_major
3'SS Sequence:
CCCTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
CTGGCGGTGACC
Flanking Amino Acid:
LSLVLLNAPPGDRERGELGL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54
0.1
1.3
40.3
45.7
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
72.1
0.5
0.7
64.6
30.8
Minor 5ss
36
-1.6
3.5
48.5
47.2
Minor BPS
40.5
-0.7
2.6
52.58
45.8

Associated Gene:

Gene:
HYI
Ensembl Gene ID:
ENSAPLG00000012474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012998
20851595 - 20853977
2383