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Intron Name: Anas_platyrhynchos_platyrhynchos_8_21026584_21076309_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21026584 - 21076309

Intron Length:

49726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTAAC

5'SS Class:

major

3'SS Sequence:

GTTGTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

ATGTCCTCATGG

Flanking Amino Acid:

CLMLPLAGADSKPTFMKAPE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

75.5

34.3

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

85.2

0.79

0.9

76.9

42.1

Minor 5ss

38.2

-1.3

2.8

51.4

39.2

Minor BPS

46.1

-0.4

2.1

53.86

46.9

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000041503

21026422 - 21258535

232114

ENSAPLT00000023764

21026422 - 21257168

230747

ENSAPLT00000037272

21026422 - 21257443

231022

ENSAPLT00000013075

21026422 - 21257164

230743

ENSAPLT00000035661

21026422 - 21257168

230747

ENSAPLT00000004338

21026422 - 21257443

231022

ENSAPLT00000027105

21026422 - 21257164

230743

ENSAPLT00000044504

21026422 - 21256265

229844