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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2104790_2106135_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2104790 - 2106135
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCCGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACAAAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
LRASSCSAMDGIVTDVAVGV
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54.1
45.2
Major BPS
51.7
0.04
1.2
59.2
35.9
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
32.3
-2
3
33.6
41.9
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
PTBP2
Ensembl Gene ID:
ENSAPLG00000011687
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027774
2104641 - 2152445
47805
ENSAPLT00000020802
2104641 - 2151206
46566
ENSAPLT00000036723
2104641 - 2136631
31991