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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2106167_2118101_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2106167 - 2118101
Intron Length:
11935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
AATCTCTTACTG
Flanking Amino Acid:
IVTDVAVGVKRGSDELLSGS
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.5
39.9
Major BPS
54
0.1
1
59.7
32.6
Major PPT
89.2
0.88
0.6
88.7
20.6
Minor 5ss
38.3
-1.3
3.4
56.2
48
Minor BPS
51.4
-0
1.7
55.93
39.7

Associated Gene:

Gene:
PTBP2
Ensembl Gene ID:
ENSAPLG00000011687
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036723
2104641 - 2136631
31991
ENSAPLT00000027774
2104641 - 2152445
47805
ENSAPLT00000027173
2106136 - 2152273
46138
ENSAPLT00000020802
2104641 - 2151206
46566