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Intron Name: Anas_platyrhynchos_platyrhynchos_8_21076456_21079670_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21076456 - 21079670

Intron Length:

3215

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATAAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTGTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAGAA

U12 Branch Point Sequence:

TTGTTGTTAAAG

Flanking Amino Acid:

GKKVSSQRFEVIEFDDGSGS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

78.8

29.6

Major BPS

58.2

0.21

1.1

55.4

40.4

Major PPT

73.9

0.54

1.1

74.5

39.3

Minor 5ss

32.9

-2

2.9

40.3

45.4

Minor BPS

-0

2.2

63.83

44.2

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013075

21026422 - 21257164

230743

ENSAPLT00000035661

21026422 - 21257168

230747

ENSAPLT00000004338

21026422 - 21257443

231022

ENSAPLT00000027105

21026422 - 21257164

230743

ENSAPLT00000044504

21026422 - 21256265

229844

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000041503

21026422 - 21258535

232114

ENSAPLT00000023764

21026422 - 21257168

230747

ENSAPLT00000037272

21026422 - 21257443

231022