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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21158957_21166444_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21158957 - 21166444
Intron Length:
7488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGTAG
5'SS Class:
major
3'SS Sequence:
ATTACCTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTCTCTCTAATC
Flanking Amino Acid:
SNGRIKQLRSGGTPIRGALQ
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
66.6
41.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
68.6
0.42
1
60.3
40.8
Minor 5ss
35.6
-1.6
3.2
38.1
46.8
Minor BPS
65
0.45
1.6
74.53
36.7

Associated Gene:

Gene:
PTPRF
Ensembl Gene ID:
ENSAPLG00000012532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013075
21026422 - 21257164
230743