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Intron Name: Anas_platyrhynchos_platyrhynchos_8_21175210_21190260_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21175210 - 21190260

Intron Length:

15051

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

CTCCTTGTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTACTAG

U12 Branch Point Sequence:

TGTCCCCCTACT

Flanking Amino Acid:

YSAPANLYVRVRRVAPRFSI

Intron Amino Acid Position:

225

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

77.8

Major BPS

40.4

-0.6

1.6

36.2

41.1

Major PPT

81.8

0.71

0.8

79.5

32.5

Minor 5ss

30.7

-2.2

3.3

39.5

45.9

Minor BPS

47.1

-0.1

2.2

72.44

43.4

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013075

21026422 - 21257164

230743

ENSAPLT00000037272

21026422 - 21257443

231022

ENSAPLT00000004338

21026422 - 21257443

231022

ENSAPLT00000035661

21026422 - 21257168

230747

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000044504

21026422 - 21256265

229844

ENSAPLT00000023764

21026422 - 21257168

230747

ENSAPLT00000041503

21026422 - 21258535

232114