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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21194531_21199647_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21194531 - 21199647
Intron Length:
5117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TATTTATCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACTTCCTTCATT
Flanking Amino Acid:
PTIEARTAQSTPSAPPQEVE
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.7
0.65
0.9
70.7
39.8
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
69
0.68
1.7
81.92
40.2

Associated Gene:

Gene:
PTPRF
Ensembl Gene ID:
ENSAPLG00000012532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023764
21026422 - 21257168
230747
ENSAPLT00000041503
21026422 - 21258535
232114
ENSAPLT00000013075
21026422 - 21257164
230743
ENSAPLT00000037272
21026422 - 21257443
231022
ENSAPLT00000004338
21026422 - 21257443
231022
ENSAPLT00000027105
21026422 - 21257164
230743
ENSAPLT00000024389
21026422 - 21257351
230930
ENSAPLT00000044504
21026422 - 21256265
229844