Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21199954_21202710_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21199954 - 21202710

Intron Length:

2757

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGTGTT

5'SS Class:

strong_major

3'SS Sequence:

GTGTGTGTTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAA

U12 Branch Point Sequence:

TGCCTGCTAAAT

Flanking Amino Acid:

IPVHVRTDEDVPSAPPRKVE

Intron Amino Acid Position:

704

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

77.9

36.8

Major BPS

70.1

0.5

1.1

69.9

35.3

Major PPT

71.5

0.48

1.1

61.5

48.6

Minor 5ss

37.4

-1.4

3.6

54.1

45.6

Minor BPS

41.6

-0.5

2.3

59.81

43.2

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004338

21026422 - 21257443

231022

ENSAPLT00000027105

21026422 - 21257164

230743

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000044504

21026422 - 21256265

229844

ENSAPLT00000023764

21026422 - 21257168

230747

ENSAPLT00000041503

21026422 - 21258535

232114

ENSAPLT00000013075

21026422 - 21257164

230743

ENSAPLT00000037272

21026422 - 21257443

231022