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Intron Name: Anas_platyrhynchos_platyrhynchos_8_21209011_21211065_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

21209011 - 21211065

Intron Length:

2055

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTACC

5'SS Class:

strong_major

3'SS Sequence:

GACGCGCTCCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

GCCTCGTGGACG

Flanking Amino Acid:

QWRAEDSVDHETVIGGLLPE

Intron Amino Acid Position:

784

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

80.9

31.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

58.1

0.18

46.2

41.2

Minor 5ss

39.4

-1.2

2.7

51.9

37.5

Minor BPS

44.2

-0.6

2.2

47.71

45.6

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027105

21026422 - 21257164

230743

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000041503

21026422 - 21258535

232114

ENSAPLT00000023764

21026422 - 21257168

230747

ENSAPLT00000037272

21026422 - 21257443

231022

ENSAPLT00000013075

21026422 - 21257164

230743

ENSAPLT00000035661

21026422 - 21257168

230747