Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21211184_21213454_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21211184 - 21213454

Intron Length:

2271

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCATG

5'SS Class:

strong_major

3'SS Sequence:

GTTTATGTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

GTGTGTTTATGT

Flanking Amino Acid:

KPKVITTTGAVPGKPTMMIS

Intron Amino Acid Position:

808

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.8

38.7

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

79.6

0.67

73.2

41.7

Minor 5ss

37.5

-1.4

47.8

47.9

Minor BPS

45.2

-0.2

2.2

63.74

46.9

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027105

21026422 - 21257164

230743

ENSAPLT00000044504

21026422 - 21256265

229844

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000041503

21026422 - 21258535

232114

ENSAPLT00000013075

21026422 - 21257164

230743

ENSAPLT00000037272

21026422 - 21257443

231022

ENSAPLT00000004338

21026422 - 21257443

231022

ENSAPLT00000035661

21026422 - 21257168

230747