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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21214034_21214665_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21214034 - 21214665
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
IQSRTMPVEQVFAKNFRVNA
Intron Amino Acid Position:
1001

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
PTPRF
Ensembl Gene ID:
ENSAPLG00000012532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024389
21026422 - 21257351
230930
ENSAPLT00000041503
21026422 - 21258535
232114
ENSAPLT00000013075
21026422 - 21257164
230743
ENSAPLT00000037272
21026422 - 21257443
231022
ENSAPLT00000004338
21026422 - 21257443
231022
ENSAPLT00000035661
21026422 - 21257168
230747
ENSAPLT00000027105
21026422 - 21257164
230743
ENSAPLT00000044504
21026422 - 21256265
229844