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Intron Name: Anas_platyrhynchos_platyrhynchos_8_21220454_21221147_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21220454 - 21221147

Intron Length:

694

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTTAT

U12 Branch Point Sequence:

CAGTGCTTATGC

Flanking Amino Acid:

LPKVQTTVPVRWYYIVVVPA

Intron Amino Acid Position:

1118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

78.9

33.5

Major BPS

76.2

0.65

1.1

65.7

43.2

Major PPT

80.2

0.68

0.7

72.2

32.4

Minor 5ss

33.9

-1.8

3.5

49.9

46.5

Minor BPS

43.6

-0.5

2.2

50.66

46.2

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000041503

21026422 - 21258535

232114

ENSAPLT00000023764

21026422 - 21257168

230747

ENSAPLT00000037272

21026422 - 21257443

231022

ENSAPLT00000013075

21026422 - 21257164

230743

ENSAPLT00000035661

21026422 - 21257168

230747

ENSAPLT00000004338

21026422 - 21257443

231022

ENSAPLT00000027105

21026422 - 21257164

230743

ENSAPLT00000044504

21026422 - 21256265

229844