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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21221239_21223668_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21221239 - 21223668
Intron Length:
2430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TAGTGATGCACC
Flanking Amino Acid:
RTPDEMELDQLLEAISQGSQ
Intron Amino Acid Position:
1149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.5
36.3
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
77.8
0.62
0.9
69.5
41.6
Minor 5ss
37.8
-1.4
3.3
51.1
45.6
Minor BPS
40.3
-0.7
2.4
53.58
43.7

Associated Gene:

Gene:
PTPRF
Ensembl Gene ID:
ENSAPLG00000012532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023764
21026422 - 21257168
230747
ENSAPLT00000037272
21026422 - 21257443
231022
ENSAPLT00000013075
21026422 - 21257164
230743
ENSAPLT00000035661
21026422 - 21257168
230747
ENSAPLT00000004338
21026422 - 21257443
231022
ENSAPLT00000027105
21026422 - 21257164
230743
ENSAPLT00000044504
21026422 - 21256265
229844
ENSAPLT00000024389
21026422 - 21257351
230930
ENSAPLT00000041503
21026422 - 21258535
232114