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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21223882_21226659_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21223882 - 21226659
Intron Length:
2778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CGGTGCTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCTC
U12 Branch Point Sequence:
TGTTCTCTCCCT
Flanking Amino Acid:
VLASLEDGDTKRYAASPYSD
Intron Amino Acid Position:
1220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
70.8
39.4
Major BPS
33.6
-1
4.2
71.3
36.7
Major PPT
65.4
0.35
1.1
61.4
44.6
Minor 5ss
32.3
-2
3.6
48.7
47
Minor BPS
38.9
-0.7
3.7
72.99
44

Associated Gene:

Gene:
PTPRF
Ensembl Gene ID:
ENSAPLG00000012532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023764
21026422 - 21257168
230747
ENSAPLT00000037272
21026422 - 21257443
231022
ENSAPLT00000013075
21026422 - 21257164
230743
ENSAPLT00000035661
21026422 - 21257168
230747
ENSAPLT00000004338
21026422 - 21257443
231022
ENSAPLT00000027105
21026422 - 21257164
230743
ENSAPLT00000044504
21026422 - 21256265
229844
ENSAPLT00000024389
21026422 - 21257351
230930
ENSAPLT00000041503
21026422 - 21258535
232114