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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21227668_21229980_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21227668 - 21229980
Intron Length:
2313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTGTCTCCATCC
Flanking Amino Acid:
AILLFKSKQERKRAHSPSSK
Intron Amino Acid Position:
1297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
78.4
0.64
0.8
71.6
33
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
46.4
-0.2
2.1
63.14
42.5

Associated Gene:

Gene:
PTPRF
Ensembl Gene ID:
ENSAPLG00000012532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027105
21026422 - 21257164
230743