Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21232859_21235240_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21232859 - 21235240

Intron Length:

2382

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTTAGTTTT

5'SS Class:

major

3'SS Sequence:

GTCGCACCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCGCAC

U12 Branch Point Sequence:

CTTGTCGCACCC

Flanking Amino Acid:

ASVPSCPNISSMRDHPPIPV

Intron Amino Acid Position:

1321

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.1

82.8

30.4

Major BPS

46.9

-0.1

1.5

41.8

Major PPT

0.29

0.9

54.9

35.4

Minor 5ss

44.2

-0.6

2.8

60.5

37.8

Minor BPS

39.9

-0.7

2.3

53.1

45.1

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000023764

21026422 - 21257168

230747

ENSAPLT00000044504

21026422 - 21256265

229844

ENSAPLT00000004338

21026422 - 21257443

231022

ENSAPLT00000037272

21026422 - 21257443

231022

ENSAPLT00000027105

21026422 - 21257164

230743