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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21242220_21243964_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21242220 - 21243964
Intron Length:
1745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTAAC
U12 Branch Point Sequence:
TGTCCCCAGAGT
Flanking Amino Acid:
HSRVILTSIDGVPGSDYINA
Intron Amino Acid Position:
1395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
49.6
-0
1.3
53.3
40.4
Major PPT
86
0.81
0.6
84.8
22.9
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
44.1
-0.3
2.2
66.46
44

Associated Gene:

Gene:
PTPRF
Ensembl Gene ID:
ENSAPLG00000012532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023764
21026422 - 21257168
230747
ENSAPLT00000037272
21026422 - 21257443
231022
ENSAPLT00000013075
21026422 - 21257164
230743
ENSAPLT00000035661
21026422 - 21257168
230747
ENSAPLT00000004338
21026422 - 21257443
231022
ENSAPLT00000027105
21026422 - 21257164
230743
ENSAPLT00000044504
21026422 - 21256265
229844
ENSAPLT00000024389
21026422 - 21257351
230930
ENSAPLT00000041503
21026422 - 21258535
232114