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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21244141_21248164_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21244141 - 21248164
Intron Length:
4024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
CTCCTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TAAGCACTGACC
Flanking Amino Acid:
MMTRLEEKSRVKCDQYWPSR
Intron Amino Acid Position:
1454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.2
54.8
44.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
79.2
0.66
0.7
73.1
25.2
Minor 5ss
36.3
-1.6
3.6
46.9
48.5
Minor BPS
45.6
-0.3
2
57.73
40.6

Associated Gene:

Gene:
PTPRF
Ensembl Gene ID:
ENSAPLG00000012532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013075
21026422 - 21257164
230743
ENSAPLT00000035661
21026422 - 21257168
230747
ENSAPLT00000004338
21026422 - 21257443
231022
ENSAPLT00000027105
21026422 - 21257164
230743
ENSAPLT00000044504
21026422 - 21256265
229844
ENSAPLT00000024389
21026422 - 21257351
230930
ENSAPLT00000041503
21026422 - 21258535
232114
ENSAPLT00000023764
21026422 - 21257168
230747
ENSAPLT00000037272
21026422 - 21257443
231022