Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21248285_21249139_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21248285 - 21249139

Intron Length:

855

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGCAC

5'SS Class:

strong_major

3'SS Sequence:

CTGTCCTCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCACAT

U12 Branch Point Sequence:

CTGTCCTCAACA

Flanking Amino Acid:

YTVRTFALYKNGSSEKRELR

Intron Amino Acid Position:

1494

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

65.7

40.1

Major BPS

65.3

0.38

1.1

72.6

33.1

Major PPT

0.47

0.9

66.1

34.6

Minor 5ss

37.1

-1.5

3.3

49.6

Minor BPS

70.2

0.63

1.6

75.56

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023764

21026422 - 21257168

230747

ENSAPLT00000037272

21026422 - 21257443

231022

ENSAPLT00000013075

21026422 - 21257164

230743

ENSAPLT00000035661

21026422 - 21257168

230747

ENSAPLT00000044504

21026422 - 21256265

229844

ENSAPLT00000004338

21026422 - 21257443

231022

ENSAPLT00000027105

21026422 - 21257164

230743

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000041503

21026422 - 21258535

232114