Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21249295_21250585_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21249295 - 21250585

Intron Length:

1291

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGACGG

5'SS Class:

major

3'SS Sequence:

TTTGTTCCCGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAG

U12 Branch Point Sequence:

ATCCTCTCAGGC

Flanking Amino Acid:

PDAGPMVVHCSAGVGRTGCF

Intron Amino Acid Position:

1545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

1.1

57.3

47.4

Major BPS

58.6

0.22

1.5

38.9

Major PPT

82.3

0.73

0.8

77.6

31.2

Minor 5ss

-2.3

3.3

38.8

46.3

Minor BPS

42.3

-0.6

1.9

49.94

40.6

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023764

21026422 - 21257168

230747

ENSAPLT00000037272

21026422 - 21257443

231022

ENSAPLT00000013075

21026422 - 21257164

230743

ENSAPLT00000035661

21026422 - 21257168

230747

ENSAPLT00000004338

21026422 - 21257443

231022

ENSAPLT00000027105

21026422 - 21257164

230743

ENSAPLT00000044504

21026422 - 21256265

229844

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000041503

21026422 - 21258535

232114