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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21250872_21252719_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21250872 - 21252719
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTGAC
5'SS Class:
major
3'SS Sequence:
CTTCCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
GGGGTCTGACAT
Flanking Amino Acid:
SVTAMELEFKLLANSKAHTS
Intron Amino Acid Position:
1641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
67.9
37.7
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
85.5
0.8
0.7
80.5
24.7
Minor 5ss
27.9
-2.5
3.2
34.6
41.8
Minor BPS
41.4
-0.5
1.8
51.06
42.8

Associated Gene:

Gene:
PTPRF
Ensembl Gene ID:
ENSAPLG00000012532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024389
21026422 - 21257351
230930
ENSAPLT00000041503
21026422 - 21258535
232114
ENSAPLT00000023764
21026422 - 21257168
230747
ENSAPLT00000037272
21026422 - 21257443
231022
ENSAPLT00000013075
21026422 - 21257164
230743
ENSAPLT00000035661
21026422 - 21257168
230747
ENSAPLT00000004338
21026422 - 21257443
231022
ENSAPLT00000027105
21026422 - 21257164
230743
ENSAPLT00000044504
21026422 - 21256265
229844