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Intron Name: Anas_platyrhynchos_platyrhynchos_8_21252899_21255439_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21252899 - 21255439

Intron Length:

2541

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGCC

5'SS Class:

strong_major

3'SS Sequence:

TCGTTTGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCCGAG

U12 Branch Point Sequence:

CTGGTCCGAGCT

Flanking Amino Acid:

YINASFIDGYRQQKAYIATQ

Intron Amino Acid Position:

1700

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

77.9

31.9

Major BPS

40.9

-0.5

1.7

37.9

43.6

Major PPT

73.9

0.54

0.9

68.9

37.1

Minor 5ss

30.5

-2.2

3.5

41.8

45.1

Minor BPS

41.1

-0.6

56.71

45.8

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000041503

21026422 - 21258535

232114

ENSAPLT00000023764

21026422 - 21257168

230747

ENSAPLT00000037272

21026422 - 21257443

231022

ENSAPLT00000013075

21026422 - 21257164

230743

ENSAPLT00000035661

21026422 - 21257168

230747

ENSAPLT00000004338

21026422 - 21257443

231022

ENSAPLT00000027105

21026422 - 21257164

230743

ENSAPLT00000044504

21026422 - 21256265

229844