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Intron Name: Anas_platyrhynchos_platyrhynchos_8_21255877_21256215_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21255877 - 21256215

Intron Length:

339

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

GTTCCCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

TCCCATGTAACA

Flanking Amino Acid:

LREFKVTDARDGQSRTIRQF

Intron Amino Acid Position:

1785

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

74.9

35.3

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

72.9

0.52

0.8

66.2

Minor 5ss

29.4

-2.4

3.1

33.3

41.7

Minor BPS

45.7

-0.3

2.1

57.02

42.6

Associated Gene:

Gene:

PTPRF

Ensembl Gene ID:

ENSAPLG00000012532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013075

21026422 - 21257164

230743

ENSAPLT00000035661

21026422 - 21257168

230747

ENSAPLT00000004338

21026422 - 21257443

231022

ENSAPLT00000027105

21026422 - 21257164

230743

ENSAPLT00000024389

21026422 - 21257351

230930

ENSAPLT00000041503

21026422 - 21258535

232114

ENSAPLT00000023764

21026422 - 21257168

230747

ENSAPLT00000037272

21026422 - 21257443

231022