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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21256980_21257095_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21256980 - 21257095
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CGGTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CATTTCTCACGC
Flanking Amino Acid:
TQRPAMVQTEDQYQLCYRAA
Intron Amino Acid Position:
1882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
69.9
0.45
1
61.7
40
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
44.8
-0.4
2
54.79
43.5

Associated Gene:

Gene:
PTPRF
Ensembl Gene ID:
ENSAPLG00000012532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013075
21026422 - 21257164
230743
ENSAPLT00000041503
21026422 - 21258535
232114
ENSAPLT00000004338
21026422 - 21257443
231022
ENSAPLT00000037272
21026422 - 21257443
231022
ENSAPLT00000027105
21026422 - 21257164
230743
ENSAPLT00000024389
21026422 - 21257351
230930