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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21257161_21257317_F

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21257161 - 21257317
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAACTAGT
5'SS Class:
major
3'SS Sequence:
CCACGGCATTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CAGTTCTGACCA
Flanking Amino Acid:
EYLGSFDHYATNFAPAPNEG
Intron Amino Acid Position:
1912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.4
72.7
44.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
55.3
0.12
1
50.7
38.2
Minor 5ss
44.4
-0.6
2.7
59.2
38.7
Minor BPS
48.4
-0.1
1.8
56.58
42.8

Associated Gene:

Gene:
PTPRF
Ensembl Gene ID:
ENSAPLG00000012532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024389
21026422 - 21257351
230930