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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21262475_21262569_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21262475 - 21262569
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGCCC
5'SS Class:
major
3'SS Sequence:
CCTCCCCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
TGCGCCTCACGG
Flanking Amino Acid:
QGAHRAGLAKIVPPKEWRPR
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
58.9
37
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
72.8
0.51
0.7
69.2
24.6
Minor 5ss
25.2
-2.9
3.3
33
42.3
Minor BPS
41
-0.8
2.1
43.65
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003453
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003570
21262340 - 21281855
19516