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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21267451_21268353_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21267451 - 21268353
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
CTTACTTGAATT
Flanking Amino Acid:
WIEYGKQSVLCSCRKDMVKI
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
75.7
0.58
1
66
44.1
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
63.2
0.49
1.5
77.29
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003453
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003570
21262340 - 21281855
19516