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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21269494_21270795_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21269494 - 21270795
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
CAGACTTTAGAA
Flanking Amino Acid:
QQGEQGRKLSDCGGSAKFEE
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
79.6
34.4
Major BPS
70
0.5
1
67
39.8
Major PPT
80.7
0.69
0.8
73.5
37.1
Minor 5ss
42.8
-0.8
3.2
61.1
43.8
Minor BPS
46.3
-0.2
1.7
50.37
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003453
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003570
21262340 - 21281855
19516