Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21271158_21272912_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21271158 - 21272912

Intron Length:

1755

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGAATG

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTTGTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

GACTACTGAATT

Flanking Amino Acid:

ASMNEQELAEAAKEYIRSMK

Intron Amino Acid Position:

573

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

75.7

40.3

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

80.3

0.68

0.9

32.4

Minor 5ss

-1.6

3.2

48.6

47.1

Minor BPS

54.4

0.22

1.7

68.19

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003453

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003570

21262340 - 21281855

19516