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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21273034_21274290_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21273034 - 21274290
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCCCT
5'SS Class:
major
3'SS Sequence:
TCTCTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TAATCACTGACT
Flanking Amino Acid:
LLVKDCISDDEASEQLTPEE
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
66.6
44.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
84.8
0.78
0.8
79.9
32.1
Minor 5ss
41
-1
3.1
58.9
45.1
Minor BPS
53.2
0.18
2
75.51
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003453
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003570
21262340 - 21281855
19516