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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21276271_21276601_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21276271 - 21276601
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
ATGGACTTCACT
Flanking Amino Acid:
SRCTENALEEDCCLCSLRGG
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
76.3
33.8
Major BPS
68.7
0.46
1
71.3
34
Major PPT
74.5
0.55
1
71.4
38.4
Minor 5ss
40.6
-1
3.4
58.3
46.6
Minor BPS
49.8
0.06
2.1
71.05
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003453
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003570
21262340 - 21281855
19516