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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21280693_21281714_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21280693 - 21281714
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGGCAGCTAATT
Flanking Amino Acid:
ELPKRVKSRLSIASDMRFTE
Intron Amino Acid Position:
1013

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.9
35.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
89.4
0.89
0.6
88.9
20.3
Minor 5ss
33.8
-1.8
3
38.1
42.1
Minor BPS
41.3
-0.5
2.3
60.04
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003453
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003570
21262340 - 21281855
19516