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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21294947_21295022_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
21294947 - 21295022
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGACG
5'SS Class:
major
3'SS Sequence:
TTCGGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
GCCCCGCTGACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
63.1
43
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
71.9
0.49
0.9
65.5
36.1
Minor 5ss
26.7
-2.7
2.9
23.8
36.7
Minor BPS
39.9
-0.9
2.3
41.49
43.1

Associated Gene:

Gene:
ST3GAL3
Ensembl Gene ID:
ENSAPLG00000003303
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041635
21294912 - 21447112
152201