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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2131266_2131585_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2131266 - 2131585
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AAATACTGAAAT
Flanking Amino Acid:
NILMLKGKNQAFLELATEEA
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
34.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
76.5
0.6
1
69
40.7
Minor 5ss
42
-0.9
2.9
59.3
45.1
Minor BPS
51.6
0.13
1.7
68.78
40.6

Associated Gene:

Gene:
PTBP2
Ensembl Gene ID:
ENSAPLG00000011687
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020802
2104641 - 2151206
46566
ENSAPLT00000012235
2106136 - 2152273
46138
ENSAPLT00000036723
2104641 - 2136631
31991
ENSAPLT00000027774
2104641 - 2152445
47805
ENSAPLT00000027173
2106136 - 2152273
46138