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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2131730_2134171_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2131730 - 2134171
Intron Length:
2442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACTGT
5'SS Class:
weak_major
3'SS Sequence:
TTGTGTCTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATCTCTTTAAAT
Flanking Amino Acid:
ELKTDNTLNQRAQAVLQAVT
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.7
41.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
70.6
0.46
1.1
68.2
42.6
Minor 5ss
53.6
0.12
2.6
73.6
43
Minor BPS
74
0.83
1.3
83.47
37.5

Associated Gene:

Gene:
PTBP2
Ensembl Gene ID:
ENSAPLG00000011687
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027774
2104641 - 2152445
47805
ENSAPLT00000027173
2106136 - 2152273
46138
ENSAPLT00000020802
2104641 - 2151206
46566
ENSAPLT00000012235
2106136 - 2152273
46138
ENSAPLT00000036723
2104641 - 2136631
31991