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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21330329_21337806_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21330329 - 21337806
Intron Length:
7478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATGATAT
Flanking Amino Acid:
PMAAPDTAIPKYDKLGFLLN
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
67.8
37.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
34.8
-1.7
3.6
49.7
42.3
Minor BPS
45.2
-0.2
2
66.96
43.4

Associated Gene:

Gene:
ST3GAL3
Ensembl Gene ID:
ENSAPLG00000003303
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036649
21294912 - 21447112
152201
ENSAPLT00000041635
21294912 - 21447112
152201