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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21337850_21356460_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21337850 - 21356460
Intron Length:
18611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TTATTTTTTACA
Flanking Amino Acid:
LGFLLNLDSKLPPELASRYA
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
92
0.94
0.7
87.7
29.5
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
65.1
0.47
1.6
75.19
35.9

Associated Gene:

Gene:
ST3GAL3
Ensembl Gene ID:
ENSAPLG00000003303
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029212
21294912 - 21447112
152201
ENSAPLT00000003384
21294912 - 21447112
152201
ENSAPLT00000041635
21294912 - 21447112
152201
ENSAPLT00000036649
21294912 - 21447112
152201