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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2134337_2134412_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2134337 - 2134412
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
ATGTTTTTGACA
Flanking Amino Acid:
YPVTLDVLHQIFSKFGAVLK
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
84.6
0.86
1
74
41.2
Major PPT
76
0.58
1
72.7
41.8
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
67.6
0.55
1.2
71.39
34.7

Associated Gene:

Gene:
PTBP2
Ensembl Gene ID:
ENSAPLG00000011687
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027173
2106136 - 2152273
46138
ENSAPLT00000020802
2104641 - 2151206
46566
ENSAPLT00000012235
2106136 - 2152273
46138
ENSAPLT00000036723
2104641 - 2136631
31991
ENSAPLT00000027774
2104641 - 2152445
47805