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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2134524_2136554_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2134524 - 2136554
Intron Length:
2031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GCACTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GGAAATTTAATT
Flanking Amino Acid:
DPVNAQQAKLEIRMWP*
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
82.6
29.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.9
0.47
0.9
64
36.5
Minor 5ss
41.2
-1
2.8
53
39
Minor BPS
52.4
0.15
1.5
64.45
39.6

Associated Gene:

Gene:
PTBP2
Ensembl Gene ID:
ENSAPLG00000011687
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036723
2104641 - 2136631
31991