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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2134524_2142754_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2134524 - 2142754
Intron Length:
8231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTATTTTAAAT
Flanking Amino Acid:
DPVNAQQAKLALDGQNIYNA
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
82.6
29.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.8
0.83
0.7
80.5
31.5
Minor 5ss
41.2
-1
2.8
53
39
Minor BPS
66.3
0.59
1.4
80.02
35.4

Associated Gene:

Gene:
PTBP2
Ensembl Gene ID:
ENSAPLG00000011687
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020802
2104641 - 2151206
46566
ENSAPLT00000012235
2106136 - 2152273
46138
ENSAPLT00000027774
2104641 - 2152445
47805
ENSAPLT00000027173
2106136 - 2152273
46138