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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21392772_21405471_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21392772 - 21405471
Intron Length:
12700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTCTTCCTAATG
Flanking Amino Acid:
FVPPFGIKGQDNLIKAILSA
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
62.5
42.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
80.4
0.68
0.7
72.7
32.1
Minor 5ss
35.9
-1.6
3.3
47.1
48.3
Minor BPS
60.8
0.2
1.7
67.26
41

Associated Gene:

Gene:
ST3GAL3
Ensembl Gene ID:
ENSAPLG00000003303
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036649
21294912 - 21447112
152201
ENSAPLT00000029212
21294912 - 21447112
152201
ENSAPLT00000003384
21294912 - 21447112
152201
ENSAPLT00000041635
21294912 - 21447112
152201