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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_21405536_21413495_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21405536 - 21413495
Intron Length:
7960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TGTTACAAAAAT
Flanking Amino Acid:
KDYRLTPALDSLSCRRCIIV
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
60.3
0.26
1
65.5
28
Major PPT
82.2
0.72
0.8
76.7
32.1
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
47
-0.1
2.2
72.5
43.4

Associated Gene:

Gene:
ST3GAL3
Ensembl Gene ID:
ENSAPLG00000003303
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036649
21294912 - 21447112
152201
ENSAPLT00000029212
21294912 - 21447112
152201
ENSAPLT00000003384
21294912 - 21447112
152201
ENSAPLT00000041635
21294912 - 21447112
152201